Publications

2025

  1. Recent genetic drift in the co-diversified gut bacterial symbionts of laboratory mice
    Daniel D Sprockett, Brian A Dillard, Abigail A Landers, and 2 more authors
    Nature communications, 2025
  2. A cost and community perspective on the barriers to microbiome data reuse
    Julia M Kelliher, Leah YD Johnson, Francisca E Rodriguez, and 8 more authors
    Frontiers in Bioinformatics, 2025
  3. Quantifying the impact of workshops promoting microbiome data standards and data stewardship
    Julia M Kelliher, Francisca E Rodriguez, Leah YD Johnson, and 8 more authors
    Scientific reports, 2025
  4. Prehistoric Global Migration of Vanishing Gut Microbes With Humans
    Matthew M Carter, Zhiru Liu, Matthew R Olm, and 8 more authors
    bioRxiv, 2025

2024

  1. Removal of sequencing adapter contamination improves microbial genome databases
    Andrew H Moeller, Brian A Dillard, Samantha L Goldman, and 2 more authors
    BMC genomics, 2024
  2. Female behavior drives the formation of distinct social structures in C57BL/6J versus wild-derived outbred mice in field enclosures
    Caleb C Vogt, Matthew N Zipple, Daniel D Sprockett, and 8 more authors
    BMC biology, 2024

2023

  1. Host genotype links to salivary and gut microbiota by periodontal status
    Y Kurushima, PM Wells, RCE Bowyer, and 7 more authors
    Journal of dental research, 2023
  2. Convergent remodelling of the gut microbiome is associated with host energetic condition over long-distance migration
    Brian K Trevelline, Daniel Sprockett, William V DeLuca, and 3 more authors
    Functional ecology, 2023
  3. Widespread extinctions of co-diversified primate gut bacterial symbionts from humans
    Jon G Sanders, Daniel D Sprockett, Yingying Li, and 8 more authors
    Nature microbiology, 2023
  4. Home-site advantage for host species–specific gut microbiota
    Daniel D Sprockett, Jeffrey D Price, Anthony F Juritsch, and 6 more authors
    Science Advances, 2023
  5. When microbes go missing: Understanding the impact of diversity loss within the gut microbiome
    Daniel D Sprockett and Katharine Z Coyte
    Cell Host & Microbe, 2023
  6. Assessing co-diversification in host-associated microbiomes
    Andrew H Moeller, Jon G Sanders, Daniel D Sprockett, and 1 more author
    Journal of evolutionary biology, 2023

2022

  1. Influential factors of saliva microbiota composition
    Philippa M Wells, Daniel D Sprockett, Ruth CE Bowyer, and 4 more authors
    Scientific Reports, 2022

2021

  1. Microbiomes: Infant chimps crawling with bacteria
    Daniel D Sprockett and Andrew H Moeller
    Current Biology, 2021

2020

  1. Microbiota assembly, structure, and dynamics among Tsimane horticulturalists of the Bolivian Amazon
    Daniel D Sprockett, Melanie Martin, Elizabeth K Costello, and 4 more authors
    Nature communications, 2020

2019

  1. Treatment-specific composition of the gut microbiota is associated with disease remission in a pediatric Crohn’s disease cohort
    Daniel Sprockett, Natalie Fischer, Rotem Sigall Boneh, and 8 more authors
    Inflammatory Bowel Diseases, 2019

2018

  1. Characterization of the facial microbiome in twins discordant for rosacea
    Asifa K Zaidi, Katrina Spaunhurst, Daniel Sprockett, and 7 more authors
    Experimental dermatology, 2018
  2. Role of priority effects in the early-life assembly of the gut microbiota
    Daniel Sprockett, Tadashi Fukami, and David A Relman
    Nature Reviews Gastroenterology & Hepatology, 2018

2016

  1. The effect of microbial colonization on the host proteome varies by gastrointestinal location
    Joshua S Lichtman, Emily Alsentzer, Mia Jaffe, and 8 more authors
    The ISME journal, 2016
  2. Comparison of pectin-degrading fungal communities in temperate forests using glycosyl hydrolase family 28 pectinase primers targeting Ascomycete fungi
    Matthew D Gacura, Daniel D Sprockett, Bess Heidenreich, and 1 more author
    Journal of Microbiological Methods, 2016

2015

  1. Use of 16S rRNA sequencing and quantitative PCR to correlate venous leg ulcer bacterial bioburden dynamics with wound expansion, antibiotic therapy, and healing
    Daniel D Sprockett, Christine G Ammons, and Marie S Tuttle
    Wound Repair and Regeneration, 2015

2011

  1. Evolutionary analysis of glycosyl hydrolase family 28 (GH28) suggests lineage-specific expansions in necrotrophic fungal pathogens
    Daniel D Sprockett, Helen Piontkivska, and Christopher B Blackwood
    Gene, 2011

2010

  1. Circadian input kinases and their homologs in Cyanobacteria: evolutionary constraints versus architectural diversification
    Ivan Baca, Daniel Sprockett, and Volodymyr Dvornyk
    Journal of molecular evolution, 2010